SimBA Presentations, Workflow, Documents
==========================================

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📈 Workflow Diagram
--------------------------
Visual overview of the SimBA analysis pipeline, from video input to classification output.

.. image:: ../_static/img/simba_workflow.png
   :width: 1000
   :align: center

:download:`📄 Download Workflow (PDF) <../_static/pdf/SimBA_workflow.pdf>`


🧠 SimBA Poster – GRC
--------------------------
Poster presented at the Gordon Research Conference summarizing SimBA’s capabilities and applications.

.. image:: ../_static/img/simba_sam_poster_2.webp
   :width: 1000
   :align: center

:download:`🖼️ Download Poster (PDF) <../_static/pdf/simba_poster_sam_2.pdf>`


🔍 SimBA Explainability Slides – Winter Brain
--------------------------
Slides introducing explainability features within SimBA, presented at Winter Brain Workshop.


.. image:: ../_static/img/explainability_slide.webp
   :width: 1000
   :align: center
   :target: https://osf.io/f9ws3/

:download:`📊 Download Explainability Presentation (PPTX) <https://osf.io/f9ws3/>`


🧬 SimBA Slides – SfN
--------------------------
Presentation from Society for Neuroscience (SfN) showcasing SimBA’s behavior classification use cases.

.. image:: ../_static/img/goodwin_sfn.webp
   :width: 1000
   :align: center
   :target: https://osf.io/y9xj5/

:download:`📊 Download SfN Presentation (PPTX) <https://osf.io/y9xj5/>`


📄 SimBA Preprint – bioRxiv
--------------------------
Original preprint detailing SimBA’s architecture, methods, and early validation examples.

.. image:: ../_static/img/simba_biorxiv_header.webp
   :width: 1000
   :align: center
   :target: https://www.biorxiv.org/content/10.1101/2020.04.19.049452v2.full.pdf

:download:`📄 Download Preprint (PDF) <https://www.biorxiv.org/content/10.1101/2020.04.19.049452v2.full.pdf>`
:download:`💾 Backup PDF <../_static/pdf/Nilsson_etal_2024.pdf>`

📰 SimBA Paper – Nature Neuroscience
----------------------------------------------------
Peer-reviewed publication in *Nature Neuroscience* Describing SimBA.

.. image:: ../_static/img/simba_paper_nn_header.webp
   :width: 1000
   :align: center
   :target: https://static1.squarespace.com/static/5b1b659871069912b3022368/t/666b3f0bae03e61fecdaab73/1718304536255/Goodwin+2024+NN.pdf

:download:`🔗 Published PDF (Primary Link) <https://static1.squarespace.com/static/5b1b659871069912b3022368/t/666b3f0bae03e61fecdaab73/1718304536255/Goodwin+2024+NN.pdf>`
:download:`💾 Backup PDF <../_static/pdf/Goodwin_etal_2024.pdf>`

📓 SimBA API example notebook and ML concepts
----------------------------------------------------

.. image:: ../_static/img/simba_api_example_nb.webp
   :width: 1000
   :align: center
   :target: https://colab.research.google.com/drive/1x8oBKmSvndSakCsZvpITiNpQY-TDIsae#scrollTo=ETqBJrguDM6_

:download:`🔗 Notebook <https://colab.research.google.com/drive/1x8oBKmSvndSakCsZvpITiNpQY-TDIsae#scrollTo=ETqBJrguDM6_>`


𝄃𝄃𝄂𝄂𝄀𝄁𝄃𝄂𝄂𝄃 SimBA QR codes
----------------------------------------------------

.. image:: ../_static/img/simba_qr_codes.webp
   :width: 1000
   :align: center
   :target: https://osf.io/re4x8

:download:`🔗 PDF <https://osf.io/re4x8>`


🎥 SimBA overview 2025/10
----------------------------------------------------

.. image:: ../_static/img/overview_video.webp
   :width: 1000
   :align: center
   :target: https://simba-uw-tf-dev.readthedocs.io/en/latest/overview_video_202510.html


:download:`🔗 OSF-MP4 <https://osf.io/2uack>`
:download:`🔗 VIEW-YOUTUBE <https://www.youtube.com/watch?v=oEr2-3Cuhb0>`
:download:`🔗 SLIDES <https://osf.io/32vtd/files/97zc6>`


🧪 SimBA Published Use Cases
----------------------------------------------------
Spreadsheet collection of real-world independent SimBA applications and validations.

.. warning::
   This list is not actively maintained and may be outdated.

.. image:: ../_static/img/simba_usecases_header.webp
   :width: 1000
   :align: center
   :target: https://docs.google.com/spreadsheets/d/169enc3Am2KQKifxj1F9KEKKLbftpMhBlw49zjl-egsY/edit?usp=sharing

🔗 `View Use Cases Spreadsheet (Google Sheets) <https://docs.google.com/spreadsheets/d/169enc3Am2KQKifxj1F9KEKKLbftpMhBlw49zjl-egsY/edit?usp=sharing>`__