📚 Notebooks
=============

Assortment of examples to execute SimBA commands through custom code outside the code aimed at speeding up processing
and surface additional functionalities.


⚙️ General processing
-------------------
.. toctree::
   :maxdepth: 1

   nb/CLI Example 1
   nb/shap_example_1
   nb/shap_example_2
   nb/shap_log_3
   nb/outlier_correction
   nb/third_party_append
   nb/advanced_smoothing_interpolation
   nb/advanced_outlier_correction
   nb/kleinberg_gridsearch
   nb/train_models

📊 Visualizations
-------------------
.. toctree::
   :maxdepth: 1

   nb/path_plots
   nb/classifier_validation_videos
   nb/gantt_plots
   nb/distance_plotter
   nb/clf_results_plotting
   nb/Visualize pose-estimation
   nb/roi_feature_visualizer
   nb/probability_plots
   nb/hatmap_location_plotter
   nb/heatmap_clf
   nb/pose_plotter_gpu

📐 Geometry- and image-related calculators
-------------------
Some example operations pertaining to working with animals and environments as geometries.

.. toctree::
   :maxdepth: 1

   nb/geometry_example_1
   nb/geometry_example_2
   nb/geometry_ex_3
   nb/geometry_example_3
   nb/geometry_example_5
   nb/geometry_example_6
   nb/geometry_example_7
   nb/yolo_ex_1
   nb/yolo_ex_2
   nb/bg_remove
   nb/egocentric_align
   nb/blob_tracking
   nb/blob_tracking_vis

🧰 Miscellaneous
-------------------
.. toctree::
   :maxdepth: 1

   nb/import_sleap_h5
   nb/multiclass
   nb/define_rois