Aggregate classifier statistics calculator -------------------------------------------------- .. autoclass:: simba.data_processors.agg_clf_calculator.AggregateClfCalculator :members: :undoc-members: Interpolate pose-estimation data -------------------------------------------------- .. automodule:: simba.data_processors.interpolate :members: :undoc-members: Advanced pose-estimation interpolation -------------------------------------------------- .. automodule:: simba.data_processors.advanced_interpolator :members: :undoc-members: Smooth pose-estimation data -------------------------------------------------- .. automodule:: simba.data_processors.smoothing :members: :undoc-members: Advanced smooth pose-estimation data -------------------------------------------------- .. automodule:: simba.data_processors.advanced_smoothing :members: :undoc-members: Directing-other-animals calculator ------------------------------------------------------------------- .. automodule:: simba.data_processors.directing_other_animals_calculator :members: :undoc-members: Directing-other-animals body-parts calculator ------------------------------------------------------------------- .. automodule:: simba.data_processors.directing_other_animals_calculator :members: :undoc-members: Forward-spike-time-tiling coefficient calculator ----------------------------------------------- .. automodule:: simba.data_processors.fsttc_calculator :members: :undoc-members: Pose interpolator calculator ----------------------------------------------- .. automodule:: simba.data_processors.interpolate_pose :members: :undoc-members: Pose interpolator and smoothing calculators ------------------------------------------------------ .. automodule:: simba.data_processors.interpolation_smoothing :members: :undoc-members: Kleinberg calculator --------------------------------------------------- .. automodule:: simba.data_processors.kleinberg_calculator :members: :undoc-members: Movement calculator -------------------------------------------------- .. automodule:: simba.data_processors.movement_calculator :members: :undoc-members: Pup-retrieval calculator -------------------------------------------------------- .. automodule:: simba.data_processors.pup_retrieval_calculator :members: :undoc-members: SimBA pyburst calculator -------------------------------------------------- .. automodule:: simba.data_processors.pybursts_calculator :members: :undoc-members: Severity calculator -------------------------------------------------- .. automodule:: simba.data_processors.severity_calculator :members: :undoc-members: Classifier time-bins calculator ------------------------------------------------------- .. automodule:: simba.data_processors.timebins_clf_calculator :members: :undoc-members: Movement time-bins calculator ------------------------------------------------------------ .. automodule:: simba.data_processors.timebins_movement_calculator :members: :undoc-members: Movement time-bins calculator (multiprocess) ------------------------------------------------------------ .. autoclass:: simba.data_processors.timebins_movement_calculator_mp.TimeBinsMovementCalculatorMultiprocess :members: :undoc-members: Aggregate classifier statistics (multiprocess) ------------------------------------------------------------ .. autoclass:: simba.data_processors.agg_clf_counter_mp.AggregateClfCalculatorMultiprocess :members: :undoc-members: Directing-animal-to-bodypart calculator ------------------------------------------------------------ .. automodule:: simba.data_processors.directing_animal_to_bodypart :members: :undoc-members: Severity bout-based calculator ------------------------------------------------------------ .. automodule:: simba.data_processors.severity_bout_based_calculator :members: :undoc-members: Severity frame-based calculator ------------------------------------------------------------ .. automodule:: simba.data_processors.severity_frame_based_calculator :members: :undoc-members: YOLO track cleaner ------------------------------------------------------------ .. autoclass:: simba.data_processors.yolo_track_cleaner.YoloTrackCleaner :members: :undoc-members: SHAP log (GPU) ------------------------------------------------------------ .. autofunction:: simba.data_processors.cuda.create_shap_log.create_shap_log Mutual exclusivity refactorer ------------------------------------------------------------ .. automodule:: simba.data_processors.mutual_exclusivity_corrector :members: :undoc-members: Boolean conditional calculator ------------------------------------------------------------ .. automodule:: simba.data_processors.boolean_conditional_calculator :members: :undoc-members: Gibbs sampling ------------------------------------------------------------ .. automodule:: simba.data_processors.gibbs_sampler :members: :undoc-members: Spontaneous alternation calculator ------------------------------------------------------------ .. automodule:: simba.data_processors.spontaneous_alternation_calculator :members: :undoc-members: "Blob" location detector ------------------------------------------------------------ .. automodule:: simba.data_processors.blob_location_computer :members: :undoc-members: Egocentric data / video alignment ------------------------------------------------------------ .. automodule:: simba.data_processors.egocentric_aligner :members: :undoc-members: Heuristic circling detector ------------------------------------------------------------ .. automodule:: simba.data_processors.circling_detector :members: :undoc-members: Heuristic freezing detector ------------------------------------------------------------ .. automodule:: simba.data_processors.freezing_detector :members: :undoc-members: Data GPU methods ---------------------------------------------- .. automodule:: simba.data_processors.cuda.data :members: :undoc-members: :show-inheritance: Light-dark box analysis ---------------------------------------------- .. automodule:: simba.data_processors.light_dark_box_analyzer :members: :undoc-members: :show-inheritance: