Source code for simba.ui.pop_ups.movement_analysis_time_bins_pop_up

__author__ = "Simon Nilsson; sronilsson@gmail.com"

import os
from tkinter import *
from typing import Union

from simba.data_processors.timebins_movement_calculator import \
    TimeBinsMovementCalculator
from simba.data_processors.timebins_movement_calculator_mp import \
    TimeBinsMovementCalculatorMultiprocess
from simba.mixins.config_reader import ConfigReader
from simba.mixins.pop_up_mixin import PopUpMixin
from simba.ui.tkinter_functions import (CreateLabelFrameWithIcon, Entry_Box,
                                        SimbaCheckbox, SimBADropDown)
from simba.utils.checks import check_float
from simba.utils.enums import ConfigKey, Keys, Links
from simba.utils.errors import NoDataError


[docs]class MovementAnalysisTimeBinsPopUp(ConfigReader, PopUpMixin): """ Tkinter pop-up for defining parameters when computing movements in time-bins. :example: >>> _ = MovementAnalysisTimeBinsPopUp(config_path='/Users/simon/Desktop/envs/simba/troubleshooting/two_black_animals_14bp/project_folder/project_config.ini') >>> _ = MovementAnalysisTimeBinsPopUp(config_path=r"C:\troubleshooting\two_black_animals_14bp\project_folder\project_config.ini") """ def __init__(self, config_path: Union[str, os.PathLike]): ConfigReader.__init__(self, config_path=config_path, read_video_info=False) if len(self.outlier_corrected_paths) == 0: raise NoDataError(msg=f'No data files found in {self.outlier_corrected_dir} directory, cannot compute time-bins movement statistics.', source=self.__class__.__name__) PopUpMixin.__init__(self, title="TIME BINS: MOVEMENT/VELOCITY", size=(400, 600), icon='run') self.animal_cnt_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="SELECT NUMBER OF ANIMALS", icon_name=Keys.DOCUMENTATION.value, icon_link=Links.DATA_ANALYSIS.value, padx=5, pady=5, relief='solid') self.animal_cnt_dropdown = SimBADropDown(parent=self.animal_cnt_frm, label="# OF ANIMALS", label_width=30, dropdown_width=20, value=1, dropdown_options=list(range(1, self.animal_cnt + 1)), command=self.create_bp_frm, img='abacus', tooltip_key='TIMEBINS_MOVEMENT_NUMBER_OF_ANIMALS') self.animal_cnt_frm.grid(row=0, column=0, sticky=NW) self.animal_cnt_dropdown.grid(row=0, column=0, sticky=NW) self.bp_threshold_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="BODY-PART THRESHOLD", icon_name=Keys.DOCUMENTATION.value, icon_link=Links.DATA_ANALYSIS.value, padx=5, pady=5, relief='solid') self.threshold_entry = Entry_Box(parent=self.bp_threshold_frm, fileDescription='THRESHOLD (0.0-1.0): ', labelwidth=30, entry_box_width=20, justify='center', value=0.0, img='pct_2', tooltip_key='TIMEBINS_MOVEMENT_BP_THRESHOLD') self.bp_threshold_frm.grid(row=1, column=0, sticky=NW) self.threshold_entry.grid(row=0, column=0, sticky=NW) self.time_bin_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="TIME BIN", icon_name='timer_2', icon_link=Links.DATA_ANALYSIS.value, padx=5, pady=5, relief='solid') self.time_bin_entry = Entry_Box(parent=self.time_bin_frm, fileDescription='TIME BIN SIZE (S): ', labelwidth=30, entry_box_width=20, justify='center', img='timer_2', value=60.0, trace=self._entrybox_bg_check_float, tooltip_key='TIMEBINS_MOVEMENT_TIME_BIN_SIZE') self.time_bin_frm.grid(row=2, column=0, sticky=NW) self.time_bin_entry.grid(row=0, column=0, sticky=NW) self.core_cnt_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="CPU CORE COUNT", icon_name='cpu_small', icon_link=Links.DATA_ANALYSIS.value, padx=5, pady=5, relief='solid', tooltip_key='CPU_TIMEBINS_MOVEMENT') self.core_cnt_dropdown = SimBADropDown(parent=self.core_cnt_frm, label="CORE COUNT:", label_width=30, dropdown_width=20, value=1, dropdown_options=list(range(1, self.cpu_cnt+1)), tooltip_key='CPU_TIMEBINS_MOVEMENT', img='cpu_small') self.core_cnt_frm.grid(row=3, column=0, sticky=NW) self.core_cnt_dropdown.grid(row=0, column=0, sticky=NW) self.measurments_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="MEASUREMENTS", icon_name='ruler', icon_link=Links.DATA_ANALYSIS.value, padx=5, pady=5, relief='solid') distance_cb, self.distance_var = SimbaCheckbox(parent=self.measurments_frm, txt='DISTANCE (CM)', txt_img='distance', val=True, tooltip_key='TIMEBINS_MOVEMENT_DISTANCE') velocity_cb, self.velocity_var = SimbaCheckbox(parent=self.measurments_frm, txt='VELOCITY (CM/S)', txt_img='run', val=False, tooltip_key='TIMEBINS_MOVEMENT_VELOCITY') self.measurments_frm.grid(row=5, column=0, sticky=NW) distance_cb.grid(row=0, column=0, sticky=NW) velocity_cb.grid(row=1, column=0, sticky=NW) self.output_format_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="OUTPUT OPTIONS", icon_name='rotate', icon_link=Links.DATA_ANALYSIS.value, padx=5, pady=5, relief='solid') transpose_cb, self.transpose_var = SimbaCheckbox(parent=self.output_format_frm, txt='TRANSPOSE OUTPUT CSV', txt_img='rotate', val=False, tooltip_key='TIMEBINS_MOVEMENT_TRANSPOSE') include_timestamps_cb, self.include_timestamps_var = SimbaCheckbox(parent=self.output_format_frm, txt='INCLUDE TIME-STAMPS', txt_img='timer', val=True, tooltip_key='TIMEBINS_MOVEMENT_INCLUDE_TIMESTAMPS') self.plots_cb, self.plots_var = SimbaCheckbox(parent=self.output_format_frm, txt='CREATE PLOTS', txt_img='plot', val=True, tooltip_key='TIMEBINS_MOVEMENT_CREATE_PLOTS') self.output_format_frm.grid(row=6, column=0, sticky=NW) transpose_cb.grid(row=0, column=0, sticky=NW) include_timestamps_cb.grid(row=1, column=0, sticky=NW) self.plots_cb.grid(row=2, column=0, sticky=NW) self.create_bp_frm(animal_cnt=1) self.create_run_frm(run_function=self._run, title=f'RUN ({len(self.outlier_corrected_paths)} files)') self.main_frm.mainloop()
[docs] def create_bp_frm(self, animal_cnt): if hasattr(self, "bp_frm"): self.bp_frm.destroy() for k, v in self.body_parts_dropdowns.items(): v.destroy() self.bp_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="SELECT BODY-PARTS", icon_name='pose', icon_link=Links.DATA_ANALYSIS.value, padx=5, pady=5, relief='solid') self.body_parts_dropdowns = {} for cnt, i in enumerate(range(int(animal_cnt))): self.body_parts_dropdowns[cnt] = SimBADropDown(parent=self.bp_frm, label=f"Animal {cnt+1}", label_width=30, dropdown_width=20, value=self.body_parts_lst[cnt], dropdown_options=self.body_parts_lst, img='circle_black', tooltip_key='TIMEBINS_MOVEMENT_BODY_PART') self.body_parts_dropdowns[cnt].grid(row=cnt, column=0, sticky=NW) self.bp_frm.grid(row=4, column=0, sticky=NW)
def _entrybox_bg_check_float(self, entry_box: Entry_Box, valid_clr: str = 'white', invalid_clr: str = 'lightsalmon'): valid_value = check_float(name='', allow_negative=False, allow_zero=False, value=entry_box.entry_get, raise_error=False)[0] entry_box.set_bg_clr(clr=valid_clr if valid_value else invalid_clr) def _run(self): check_float(name="Time bin", value=str(self.time_bin_entry.entry_get), min_value=10e-6) self.config.set(ConfigKey.PROCESS_MOVEMENT_SETTINGS.value, ConfigKey.ROI_ANIMAL_CNT.value, str(self.animal_cnt_dropdown.getChoices())) body_parts = [] for cnt, dropdown in self.body_parts_dropdowns.items(): self.config.set(ConfigKey.PROCESS_MOVEMENT_SETTINGS.value, f"animal_{cnt + 1}_bp", str(dropdown.getChoices())) body_parts.append(dropdown.getChoices()) self.update_config() core_cnt = int(self.core_cnt_dropdown.get_value()) body_part_threshold = self.threshold_entry.entry_get check_float(name=f'{self.__class__.__name__} BODY-PART THRESHOLD', value=body_part_threshold, min_value=0.0, max_value=1.0, raise_error=True, allow_zero=True, allow_negative=False) velocity, distance, transpose = self.velocity_var.get(), self.distance_var.get(), self.transpose_var.get() include_timestamps = self.include_timestamps_var.get() if core_cnt == 1: time_bin_movement_analyzer = TimeBinsMovementCalculator(config_path=self.config_path, bin_length=float(self.time_bin_entry.entry_get), plots=self.plots_var.get(), body_parts=body_parts, verbose=True, distance=distance, velocity=velocity, threshold=float(body_part_threshold), transpose=transpose, include_timestamp=include_timestamps) else: time_bin_movement_analyzer = TimeBinsMovementCalculatorMultiprocess(config_path=self.config_path, bin_length=float(self.time_bin_entry.entry_get), body_parts=body_parts, plots=self.plots_var.get(), verbose=True, core_cnt=core_cnt, distance=distance, velocity=velocity, transpose=transpose, threshold=body_part_threshold, include_timestamp=include_timestamps) time_bin_movement_analyzer.run() time_bin_movement_analyzer.save()
#_ = MovementAnalysisTimeBinsPopUp(config_path=r"D:\troubleshooting\maplight_ri\project_folder\project_config.ini") #_ = MovementAnalysisTimeBinsPopUp(config_path=r"D:\troubleshooting\maplight_ri\project_folder\project_config.ini")