All modules for which code is available

• simba.bounding_box_tools.agg_boundary_stats
• simba.bounding_box_tools.boundary_menus
• simba.bounding_box_tools.boundary_statistics
• simba.bounding_box_tools.find_boundaries
• simba.bounding_box_tools.visualize_boundaries
• simba.data_processors.advanced_interpolator
• simba.data_processors.advanced_smoothing
• simba.data_processors.agg_clf_calculator
• simba.data_processors.agg_clf_counter_mp
• simba.data_processors.blob_location_computer
• simba.data_processors.boolean_conditional_calculator
• simba.data_processors.circling_detector
• simba.data_processors.cuda.create_shap_log
• simba.data_processors.cuda.data
• simba.data_processors.cuda.image
• simba.data_processors.cuda.timeseries
• simba.data_processors.cue_light_analyzer
• simba.data_processors.cue_light_clf_statistics
• simba.data_processors.cue_light_movement_statistics
• simba.data_processors.directing_animal_to_bodypart
• simba.data_processors.directing_other_animals_calculator
• simba.data_processors.egocentric_aligner
• simba.data_processors.find_animal_blob_location
• simba.data_processors.freezing_detector
• simba.data_processors.freezing_detector_v2
• simba.data_processors.fsttc_calculator
• simba.data_processors.gibbs_sampler
• simba.data_processors.interpolate
• simba.data_processors.interpolate_pose
• simba.data_processors.interpolation_smoothing
• simba.data_processors.kleinberg_calculator
• simba.data_processors.light_dark_box_analyzer
• simba.data_processors.movement_calculator
• simba.data_processors.mutual_exclusivity_corrector
• simba.data_processors.pup_retrieval_calculator
• simba.data_processors.pybursts_calculator
• simba.data_processors.severity_bout_based_calculator
• simba.data_processors.severity_calculator
• simba.data_processors.severity_frame_based_calculator
• simba.data_processors.smoothing
• simba.data_processors.spontaneous_alternation_calculator
• simba.data_processors.timebins_clf_calculator
• simba.data_processors.timebins_movement_calculator
• simba.data_processors.timebins_movement_calculator_mp
• simba.feature_extractors.aggression_feature_extractor
• simba.feature_extractors.amber_feature_extractor
• simba.feature_extractors.boundary_rearing_analyzer
• simba.feature_extractors.cave_fish_featurizer
• simba.feature_extractors.feature_extractor_14bp
• simba.feature_extractors.feature_extractor_16bp
• simba.feature_extractors.feature_extractor_4bp
• simba.feature_extractors.feature_extractor_7bp
• simba.feature_extractors.feature_extractor_8bp
• simba.feature_extractors.feature_extractor_8bps_2_animals
• simba.feature_extractors.feature_extractor_9bp
• simba.feature_extractors.feature_extractor_user_defined
• simba.feature_extractors.feature_subsets
• simba.feature_extractors.gerbil_featurizer
• simba.feature_extractors.mitra_feature_extractor
• simba.feature_extractors.perimeter_jit
• simba.feature_extractors.rat_social_featurizer
• simba.feature_extractors.riptortus_featurizer
• simba.feature_extractors.straub_tail_analyzer
• simba.labelling.extract_labelled_frames
• simba.labelling.extract_labelling_meta
• simba.labelling.labelling_advanced_interface
• simba.labelling.play_annotation_video
• simba.mixins.annotator_mixin
• simba.mixins.circular_statistics
• simba.mixins.config_reader
• simba.mixins.feature_extraction_mixin
• simba.mixins.feature_extraction_supplement_mixin
• simba.mixins.geometry_mixin
• simba.mixins.image_mixin
• simba.mixins.plotting_mixin
• simba.mixins.pop_up_mixin
• simba.mixins.pose_importer_mixin
• simba.mixins.statistics_mixin
• simba.mixins.timeseries_features_mixin
• simba.mixins.train_model_mixin
• simba.model.grid_search_multiclass_rf
• simba.model.grid_search_rf
• simba.model.inference_batch
• simba.model.inference_multi_animal_batch
• simba.model.inference_multiclass_batch
• simba.model.inference_validation
• simba.model.ordinal_clf
• simba.model.sam_inference
• simba.model.train_multiclass_rf
• simba.model.train_rf
• simba.model.yolo_fit
• simba.model.yolo_inference
• simba.model.yolo_nvdec_inference
• simba.model.yolo_pose_inference
• simba.model.yolo_pose_track_inference
• simba.model.yolo_seg_inference
• simba.plotting.ROI_feature_visualizer
• simba.plotting.ROI_feature_visualizer_mp
• simba.plotting.blob_plotter
• simba.plotting.blob_visualizer
• simba.plotting.compare_bbox_mdls
• simba.plotting.cue_light_visualizer
• simba.plotting.distance_plotter_mp
• simba.plotting.gantt_creator_mp
• simba.plotting.geometry_plotter
• simba.plotting.path_plotter_mp
• simba.plotting.pose_plotter_mp
• simba.plotting.roi_directing_visualizer
• simba.plotting.roi_plotter
• simba.plotting.roi_plotter_mp
• simba.plotting.skeleton_video_creator
• simba.plotting.yolo_annotation_visualizer
• simba.plotting.yolo_pose_track_visualizer
• simba.plotting.yolo_pose_visualizer
• simba.plotting.yolo_seg_visualizer
• simba.plotting.yolo_visualize
• simba.pose_importers.dlc_importer_csv
• simba.pose_importers.import_mars
• simba.pose_importers.madlc_importer
• simba.pose_importers.simba_blob_importer
• simba.pose_importers.sleap_csv_importer
• simba.pose_importers.sleap_h5_importer
• simba.pose_importers.sleap_slp_importer
• simba.pose_importers.trk_importer
• simba.pose_processors.pose_reset
• simba.pose_processors.remove_keypoints
• simba.pose_processors.reorganize_keypoint
• simba.roi_tools.ROI_analyzer
• simba.roi_tools.ROI_directing_analyzer
• simba.roi_tools.ROI_feature_analyzer
• simba.roi_tools.ROI_size_standardizer
• simba.roi_tools.ROI_time_bin_calculator
• simba.roi_tools.import_roi_csvs
• simba.roi_tools.interactive_modifier_ui
• simba.roi_tools.interactive_roi_bufferer
• simba.roi_tools.interactive_roi_modifier_tkinter
• simba.roi_tools.roi_aggregate_statistics_analyzer
• simba.roi_tools.roi_aggregate_stats_mp
• simba.roi_tools.roi_clf_calculator
• simba.roi_tools.roi_clf_calculator_mp
• simba.roi_tools.roi_ruler
• simba.roi_tools.roi_selector_circle_tkinter
• simba.roi_tools.roi_selector_polygon_tkinter
• simba.roi_tools.roi_selector_rectangle_tkinter
• simba.roi_tools.roi_time_bins_analyzer
• simba.roi_tools.roi_ui
• simba.roi_tools.roi_ui_mixin
• simba.roi_tools.roi_utils
• simba.third_party_label_appenders.BENTO_appender
• simba.third_party_label_appenders.BORIS_appender
• simba.third_party_label_appenders.boris_source_cleaner
• simba.third_party_label_appenders.converters
• simba.third_party_label_appenders.deepethogram_importer
• simba.third_party_label_appenders.ethovision_import
• simba.third_party_label_appenders.observer_importer
• simba.third_party_label_appenders.shah_appender
• simba.third_party_label_appenders.solomon_importer
• simba.third_party_label_appenders.third_party_appender
• simba.third_party_label_appenders.tools
• simba.third_party_label_appenders.transform.coco_keypoints_to_yolo
• simba.third_party_label_appenders.transform.coco_keypoints_to_yolo_bbox
• simba.third_party_label_appenders.transform.coco_keypoints_to_yolo_seg
• simba.third_party_label_appenders.transform.dlc_ma_h5_to_yolo
• simba.third_party_label_appenders.transform.dlc_multi_to_yolo
• simba.third_party_label_appenders.transform.dlc_single_to_multi_format_converter
• simba.third_party_label_appenders.transform.dlc_to_labelme
• simba.third_party_label_appenders.transform.dlc_to_yolo
• simba.third_party_label_appenders.transform.labelme_to_df
• simba.third_party_label_appenders.transform.labelme_to_dlc
• simba.third_party_label_appenders.transform.labelme_to_yolo
• simba.third_party_label_appenders.transform.labelme_to_yolo_keypoints
• simba.third_party_label_appenders.transform.labelme_to_yolo_seg
• simba.third_party_label_appenders.transform.litpose_crop_annotations
• simba.third_party_label_appenders.transform.litpose_crop_annotations_bbox_square
• simba.third_party_label_appenders.transform.litpose_to_yolo_bbox
• simba.third_party_label_appenders.transform.litpose_to_yolo_keypoints
• simba.third_party_label_appenders.transform.merge_yolo_projects
• simba.third_party_label_appenders.transform.sam3_to_yolo_seg
• simba.third_party_label_appenders.transform.simba_roi_to_yolo
• simba.third_party_label_appenders.transform.simba_to_yolo
• simba.third_party_label_appenders.transform.simba_to_yolo_seg
• simba.third_party_label_appenders.transform.sleap_csv_to_yolo
• simba.third_party_label_appenders.transform.sleap_h5_to_yolo
• simba.third_party_label_appenders.transform.sleap_to_yolo
• simba.third_party_label_appenders.transform.utils
• simba.ui.blob_quick_check_interface
• simba.ui.blob_tracker_ui
• simba.ui.create_project_ui
• simba.ui.import_pose_frame
• simba.ui.import_videos_frame
• simba.ui.machine_model_settings_ui
• simba.ui.ml_settings_frm
• simba.ui.pop_ups.about_simba_pop_up
• simba.ui.pop_ups.append_roi_features_animals_pop_up
• simba.ui.pop_ups.append_roi_features_bodypart_pop_up
• simba.ui.pop_ups.archive_files_pop_up
• simba.ui.pop_ups.batch_preprocess_pop_up
• simba.ui.pop_ups.clf_add_remove_print_pop_up
• simba.ui.pop_ups.clf_by_roi_pop_up
• simba.ui.pop_ups.clf_by_timebins_pop_up
• simba.ui.pop_ups.clf_descriptive_statistics_pop_up
• simba.ui.pop_ups.clf_plot_pop_up
• simba.ui.pop_ups.clf_probability_plot_pop_up
• simba.ui.pop_ups.clf_validation_plot_pop_up
• simba.ui.pop_ups.create_user_defined_pose_configuration_pop_up
• simba.ui.pop_ups.csv_2_parquet_pop_up
• simba.ui.pop_ups.data_plot_pop_up
• simba.ui.pop_ups.directing_other_animals_plot_pop_up
• simba.ui.pop_ups.distance_plot_pop_up
• simba.ui.pop_ups.fsttc_pop_up
• simba.ui.pop_ups.gantt_pop_up
• simba.ui.pop_ups.heatmap_clf_pop_up
• simba.ui.pop_ups.heatmap_location_pop_up
• simba.ui.pop_ups.kleinberg_pop_up
• simba.ui.pop_ups.make_path_plot_pop_up
• simba.ui.pop_ups.movement_analysis_pop_up
• simba.ui.pop_ups.movement_analysis_time_bins_pop_up
• simba.ui.pop_ups.outlier_settings_pop_up
• simba.ui.pop_ups.path_plot_pop_up
• simba.ui.pop_ups.pose_bp_drop_pop_up
• simba.ui.pop_ups.pose_reorganizer_pop_up
• simba.ui.pop_ups.pup_retrieval_pop_up
• simba.ui.pop_ups.quick_path_plot_pop_up
• simba.ui.pop_ups.roi_analysis_pop_up
• simba.ui.pop_ups.roi_analysis_time_bins_pop_up
• simba.ui.pop_ups.roi_features_plot_pop_up
• simba.ui.pop_ups.roi_tracking_plot_pop_up
• simba.ui.pop_ups.severity_analysis_pop_up
• simba.ui.pop_ups.subset_feature_extractor_pop_up
• simba.ui.pop_ups.third_party_annotator_appender_pop_up
• simba.ui.pop_ups.validation_plot_pop_up
• simba.ui.pop_ups.video_processing_pop_up
• simba.ui.pop_ups.visualize_pose_in_dir_pop_up
• simba.ui.px_to_mm_ui
• simba.ui.tkinter_functions
• simba.ui.user_defined_pose_creator
• simba.ui.video_info_ui
• simba.ui.video_timelaps
• simba.unsupervised.bout_aggregator
• simba.unsupervised.cluster_frequentist_calculator
• simba.unsupervised.cluster_video_visualizer
• simba.unsupervised.cluster_xai_calculator
• simba.unsupervised.data_extractor
• simba.unsupervised.dataset_creator
• simba.unsupervised.dbcv_calculator
• simba.unsupervised.embedding_correlation_calculator
• simba.unsupervised.grid_search_visualizers
• simba.unsupervised.hdbscan_clusterer
• simba.unsupervised.umap_embedder
• simba.utils.checks
• simba.utils.cli.cli_tools
• simba.utils.config_creator
• simba.utils.custom_feature_extractor
• simba.utils.data
• simba.utils.enums
• simba.utils.errors
• simba.utils.lookups
• simba.utils.printing
• simba.utils.read_write
• simba.utils.warnings
• simba.utils.yolo
• simba.video_processors.batch_process_create_ffmpeg_commands
• simba.video_processors.batch_process_menus
• simba.video_processors.blob_tracking_executor
• simba.video_processors.brightness_contrast_ui
• simba.video_processors.clahe_ui
• simba.video_processors.multi_cropper
• simba.video_processors.roi_selector
• simba.video_processors.roi_selector_circle
• simba.video_processors.roi_selector_polygon
• simba.video_processors.video_processing
• simba.video_processors.videos_to_frames