Tutorials
- Regions of Interest (ROIs) in SimBA
- Before analyzing ROIs in SimBA
- Part 1. Defining ROIs in SimBA
- Part 2: The “Region of Interest Settings” menu
- Shape manipulations
- Deleting ROIs
- Duplicating ROIs
- Changing ROI locations
- Changing the shape of the ROI
- Aligning ROIs
- Change ROI attributes
- Apply shapes from another video
- Show shape size information
- Delete all ROI definitions in your SimBA project
- Next steps
- Calculating forward-spike time tiling coefficents in SimBA
- Feature family sub-sets in SimBA
- User-defined ‘feature extraction’ scripts in SimBA
- Kleinberg behavior classification smoothing in SimBA
- Animal-anchored ROIs (bounding-boxes) in SimBA
- Model explainability and calculating feature SHAP values in SimBA
- Who is looking at who: calculate “directionality” between animals in SimBA
- Post-classification Validation (detecting false-positives)
- Cue Light Analysis in SimBA
- Using multi-animal pose-estimation data in SimBA
- Batch Video Processing
- SimBA Installation
- User-defined pose-configurations in SimBA
- Video processing tools in SimBA
- Shorten Videos
- Clip video into multiple videos
- Crop Video
- Fixed Crop Videos
- Multi-crop videos
- Downsample video
- Get Coordinates (calibrate distance)
- Change formats
- CLAHE enhance video
- Superimpose frame numbers on video
- Convert to grayscale
- Change FPS (frame-rate) of videos
- Create path plots
- Merge images to video
- Generate gifs
- Extract Frames