Source code for simba.ui.pop_ups.roi_analysis_pop_up
import os
from tkinter import *
from typing import Union
from simba.mixins.config_reader import ConfigReader
from simba.mixins.pop_up_mixin import PopUpMixin
from simba.roi_tools.ROI_analyzer import ROIAnalyzer
from simba.ui.tkinter_functions import (CreateLabelFrameWithIcon, DropDownMenu,
Entry_Box, SimbaButton, SimbaCheckbox)
from simba.utils.checks import check_float
from simba.utils.enums import ConfigKey, Formats, Keys, Links
[docs]class ROIAnalysisPopUp(ConfigReader, PopUpMixin):
"""
:example:
>>> _ = ROIAnalysisPopUp(config_path='/Users/simon/Desktop/envs/simba/troubleshooting/two_black_animals_14bp/project_folder/project_config.ini')
"""
def __init__(self, config_path: Union[str, os.PathLike]):
ConfigReader.__init__(self, config_path=config_path, read_video_info=False)
PopUpMixin.__init__(self, title="ROI ANALYSIS", size=(400, 400), icon='shapes_small')
self.animal_cnt_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="SELECT NUMBER OF ANIMALS", icon_name=Keys.DOCUMENTATION.value, icon_link=Links.ROI_DATA_ANALYSIS.value)
self.animal_cnt_dropdown = DropDownMenu(self.animal_cnt_frm, "# of animals", list(range(1, self.animal_cnt + 1)), labelwidth=20)
self.animal_cnt_dropdown.setChoices(1)
self.animal_cnt_confirm_btn = SimbaButton(parent=self.animal_cnt_frm, txt="CONFIRM", img='tick', txt_clr="blue", font=Formats.FONT_REGULAR.value, cmd=self.create_settings_frm)
self.animal_cnt_frm.grid(row=0, column=0, sticky=NW)
self.animal_cnt_dropdown.grid(row=0, column=0, sticky=NW)
self.animal_cnt_confirm_btn.grid(row=0, column=1, sticky=NW)
self.main_frm.mainloop()
[docs] def create_settings_frm(self):
if hasattr(self, "setting_frm"):
self.setting_frm.destroy()
self.body_part_frm.destroy()
self.setting_frm = LabelFrame(
self.main_frm, text="SETTINGS", font=Formats.FONT_HEADER.value
)
self.choose_bp_frm(parent=self.setting_frm, bp_options=self.body_parts_lst)
self.choose_bp_threshold_frm(parent=self.setting_frm)
self.calculate_distances_frm = LabelFrame( self.setting_frm, text="CALCULATE DISTANCES", font=Formats.FONT_HEADER.value)
self.calculate_distance_moved_cb, self.calculate_distance_moved_var = SimbaCheckbox(parent=self.calculate_distances_frm, txt='COMPUTE DISTANCES MOVED IN ROIs', txt_img='path')
self.calculate_distance_moved_cb.grid(row=0, column=0, sticky=NW)
self.detailed_roi_frm = LabelFrame(self.setting_frm, text="DETAILED ROI BOUT DATA", font=Formats.FONT_HEADER.value)
self.detailed_roi_cb, self.detailed_roi_var = SimbaCheckbox(parent=self.detailed_roi_frm, txt='DETAILED ROI BOUT DATA', txt_img='details')
self.detailed_roi_cb.grid(row=1, column=0, sticky=NW)
self.calculate_distances_frm.grid(row=self.frame_children(frame=self.setting_frm), column=0, sticky=NW)
self.detailed_roi_frm.grid(row=self.frame_children(frame=self.setting_frm) + 1, column=0, sticky=NW)
self.setting_frm.grid(row=1, column=0, sticky=NW)
self.create_run_frm(run_function=self.run)
self.main_frm.mainloop()
[docs] def run(self):
settings = {}
check_float(
name="Probability threshold",
value=self.probability_entry.entry_get,
min_value=0.00,
max_value=1.00,
)
settings["threshold"] = float(self.probability_entry.entry_get)
body_parts = []
for cnt, dropdown in self.body_parts_dropdowns.items():
body_parts.append(dropdown.getChoices())
roi_analyzer = ROIAnalyzer(
config_path=self.config_path,
data_path=None,
calculate_distances=self.calculate_distance_moved_var.get(),
detailed_bout_data=self.detailed_roi_var.get(),
threshold=float(self.probability_entry.entry_get),
body_parts=body_parts,
)
roi_analyzer.run()
roi_analyzer.save()
self.root.destroy()
# ROIAnalysisPopUp(config_path=r"C:\troubleshooting\RAT_NOR\project_folder\project_config.ini")
# ROIAnalysisPopUp(config_path='/Users/simon/Desktop/envs/troubleshooting/Termites_5/project_folder/project_config.ini')