🔬 Published Studies & Validations

Peer-reviewed studies and preprints that have used SimBA, plotted by country and summarized across species, journals, and the behaviors, brain regions, and methods they report. Compiled from the public use-case spreadsheet and the full text of the collected papers. To search and filter the individual studies, see browse all studies below.

165 studies30 countries · 175 institutions · 207 collaboration links
none186 studies (log scale)
studies:123–45–78+
partners: fewmany (bigger dot = more)co-authored study

Data pulled October 24, 2026

165published studies
30countries
20species
76journals
175institutions

Studies per year

Publications by calendar year; the current year is to-date.

By continent

Studies grouped by the continent of each contributing country.

Studies by species

Animal model studied (top 10 by study count).

Top countries

Most studies by country (top 20).

All institutions

Every contributing institution by study count (number of studies shown at left); each counted once per study it contributed to.

12University of Washington
8Washington University in St. Louis
7University of North Carolina
6Stanford University
6KU Leuven
5Polish Academy of Sciences
5EMBL Rome
5University of Hong Kong
5National Institute on Drug Abuse
5Universitat Jaume I
4University College London
4National Institutes of Health
4Max Planck Institute of Psychiatry
4Harvard Medical School
4University of Texas at Austin
4Lehigh University
4New York University
4University of Calgary
3Columbia University
3UNSW Sydney
3Weizmann Institute of Science
3Karolinska Institutet
3University of Geneva
3Platea Biosciences
3Children’s Hospital of Philadelphia
3National Institute of Mental Health
3University of the Basque Country
3Florida Atlantic University
3University of Amsterdam
3University of California San Diego
3Cornell University
2Monash University
2Medical Research Council Harwell
2City University of Hong Kong
2University of Warsaw
2University of Haifa
2Universidade de Lisboa
2Medical College of Wisconsin
2Indian Institute of Technology Madras
2University of Toronto
2Technische Universität Darmstadt
2Columbia University Irving Medical Center
2Macquarie University
2University of Pennsylvania
2Biobizkaia Health Research Institute
2Concordia University
2McGill University
2Cadi Ayyad University
2Georgetown University Medical Center
2Université de Bordeaux
2University of Veterinary Medicine Vienna
2EPFL
2Washington State University
2Texas A&M University
2UNAM
2Northwestern University Feinberg School of Medicine
2University College Cork
2Michigan State University
2Northwestern University
1Shiga University
1Rutgers
1University of Illinois Urbana-Champaign
1Rockefeller University
1Korea Advanced Institute of Science and Technology
1Jagiellonian University Medical College
1TensorAnalytics
1Instituto Politécnico Nacional
1SISSA
1Humboldt University
1Boehringer Ingelheim Pharma GmbH & Co.
1Nencki-EMBL Center of Excellence for Neural Plasticity and Brain Disorders
1University of Illinois at Chicago
1Arctic University of Norway
1Harvard Stem Cell Institute
1BROAD Institute
1DLH Corporation
1University of South Florida
1University of Massachusetts Dartmouth
1CaaMTech
1Hospital for Sick Children
1Canadian Institute for Advanced Research (CIFAR)
1Johannes Gutenberg University
1VA Boston
1Boston University Medical Center
1McLean Hospital
1Université Laval
1SMART Biomedical Microsystems Laborator Université de Sherbrooke
1Pontificia Universidad Católica del Ecuador
1Aquatic Technology Promotion Station of Xiangshan County
1Ningbo University
1Ningbo Institute of Oceanography
1Université Côte d’Azur
1IRCCS Humanitas Research Hospital
1National Research Council of Italy
1University of Milan
1Roche
1The Second Affiliated Hospital of Nanjing Medical University
1Nanjing University of Chinese Medicine
1University of South Florida Health
1University of Pennsylvania School of Veterinary Medicine
1Nanjing Medical University
1Southeast University
1University of Melbourne
1Instituto de Salud Carlos III
1Charles University
1Institute of Physiology of the Czech Academy of Sciences
1Royal College of Surgeons in Ireland
1Heidelberg University
1Inscopix
1Amherst College
1Federal University of Paraíba
1Nencki Institute of Experimental Biology of the Polish Academy of Sciences
1Emory University
1Deakin University
1Florey Institute
1University of Cambridge
1Salk Institute for Biological Studies
1Netholabs
1Donders Institute
1University Miguel Hernández
1Netherlands Institute for Neuroscience
1Hungarian Centre of Excellence for Molecular Medicine
1ELTE Eötvös Loránd University
1HUN-REN Biological Research Centre
1The International Brain Laboratory
1Fujita Health University
1Nagoya University
1Kindai University
1Hiroshima University
1Kobe University
1Gifu University
1Osaka University
1Royal Hospital for Women
1Sydney Children's Hospital Randwick
1George Washington University
1Centros de Integración Juvenil
1Hospital General Dr. Manuel Gea González
1National Institute of Diabetes and Digestive and Kidney Diseases
1University of Cagliari
1Southern Illinois University-Carbondale
1Wayne State University
1Srinakharinwirot University
1New York State Psychiatric Institute
1University of Oxford
1University of British Columbia
1Rosalind Franklin University
1Peking University School of Life Sciences
1University of Tennessee
1Howard Hughes Medical Institute
1Duke University
1Icahn School of Medicine
1National Institute on Deafness and other Communication Disorders
1CIBERsam-ISCiii
1Mahidol University
1Linköping University
1Christian-Albrechts-Universität zu Kiel
1Shinshu University
1TU Dresden
1Massachusetts General Hospital
1University of Tsukuba
1Carnegie Mellon University
1University of Bonn
1Yale School of Medicine
1Dalhousie University
1University of Saskatchewan
1Vanderbilt University
1University of Nebraska
1Philipps-University Marburg
1MCCI Corporation
1Georgia State University
1Penn State University
1Qingdao University
1University of Texas
1University of Wisconsin-Madison
1University of Arizona

Behaviours automated

INDICATIVE, NOT EXHAUSTIVE. What SimBA was used to score, read from the methods text of the collected papers: a behaviour counts once per study when it is named near a SimBA mention and near a classifier/scoring cue. Most studies score several. Keyword-based, so uncommon behaviours may be undercounted.

Brain regions

INDICATIVE, NOT EXHAUSTIVE. Papers naming each region anywhere in their full text.

Methods & tools

INDICATIVE, NOT EXHAUSTIVE. What the studies pair SimBA with — recording methods, molecular assays, and the other behaviour tools they cite.

Disease & behavioural models

INDICATIVE, NOT EXHAUSTIVE. Models, conditions and paradigms the papers study.

What SimBA has been used for

Concepts appearing across the full text of 185 downloaded studies — methods, behaviours, brain regions, models and compounds. Larger = mentioned in more papers. Brain-region terms sit in their own region; other colors only show where a word landed. Showing 132 of 165 concepts. Keyword-based overview (indicative, not exhaustive). Updated October 20, 2026.

HippocampusAmygdalaPrefrontal cortexHypothalamusThalamusBasolateral amygdalaCingulateInsulaPrelimbic / infralimbicHabenulaPreoptic areaOrbitofrontal cortexDentate gyrusEntorhinal cortexDeepLabCutLocomotionC57BL/6Ethanol / alcoholAnxietyDopamineAggressionSocial interactionDepressionAvoidanceGroomingRearingOpen fieldGlutamateStriatumFeedingElectrophysiologySerotoninSniffingAgingFreezingOptogeneticsNucleus accumbensSleep / circadianImmobilityTransgenicOperant taskAutismMatingVTAAddictionStereotypyRNA-seqEthoVisionSLEAPGABASchizophreniaOpioidSelf-administrationOxytocinSprague-Dawleyc-FosPrimateBORISNovel objectJumping / escapeLickingCocaineImmunohistochemistryKetamineFear conditioningResident-intruderKnockoutSpatial memoryDREADDPlace preferenceExtinctionAmphetamineBNSTFiber photometryCerebellumCD1EpilepsyEstrogenMethamphetamineNestingNorepinephrineCRFObesity / dietSocial defeatThree-chamberCannabinoidMorphineCalcium imagingPTSDZebrafishParkinson'sObject recognitionChronic stressAcetylcholineDorsal rapheDrosophilaAlzheimer'sWistar ratAnyMazeUltrasonic vocalisationMaternal separationCorticosteroneClimbingClozapineStartleMoSeqStroke / ischemiaOrexinPsilocybinB-SOiDBALB/cMDMABDNFSHAPDiggingNicotineCortisolLSDHead-twitchDiazepamRotarodVAMEDMTA-SOiDTestosteroneFentanylGaitCirclingTremorY-mazeADHDMK-801
CortexHippocampusThalamusHypothalamusAmygdala

Full list of studies (spreadsheet) → · one entry per study · multi-country studies counted in each country

📚 Browse all studies

Search across titles, authors, institutions and use-case descriptions, filter by species, year or publication type, and click a row to see what SimBA was used for.

Data pulled October 24, 2026 · 165 studies (98 peer-reviewed, 67 preprints)

Year Study Species Countries

Click a row to see how SimBA was used · Source spreadsheet →

📑 How to cite SimBA

Using SimBA in your research? Please cite the SimBA paper:

Nature Neuroscience · 2024 · 27(7), 1411–1424
Simple Behavioral Analysis (SimBA) as a platform for explainable machine learning in behavioral neuroscience
Goodwin, N. L., Choong, J. J., Hwang, S., et al. … Nilsson, S. R. O., & Golden, S. A.
Goodwin, N. L., Choong, J. J., Hwang, S., Pitts, K., Bloom, L., Islam, A., Zhang, Y. Y., Szelenyi, E. R., Tong, X., Newman, E. L., Miczek, K., Wright, H. R., McLaughlin, R. J., Norville, Z. C., Eshel, N., Heshmati, M., Nilsson, S. R. O., & Golden, S. A. (2024). Simple Behavioral Analysis (SimBA) as a platform for explainable machine learning in behavioral neuroscience. Nature Neuroscience, 27(7), 1411–1424. https://doi.org/10.1038/s41593-024-01649-9

The .ris file imports into Mendeley, EndNote, Zotero and most other reference managers. You can also paste the DOI (10.1038/s41593-024-01649-9) into your manager's “add by identifier” option.

SimBA works alongside other open-source tools. Please also cite the pose-estimation software and any other packages your analysis used.